Eco-Flow

Eco-Flow Basic Nextflow Training

A hands-on course that takes you from limited bioinformatics experience to running your own nf-core pipelines. Everything runs in the browser via GitHub Codespaces — nothing to install.

Course outline

Work through it, step by step

Each part opens its material on GitHub. Start at the top — or jump to whatever you need.

  1. 0

    Setup Practical

    Get your environment ready with GitHub Codespaces, so you can run everything from your browser.

    Open lesson →
  2. 1

    Command line basics Practical · optional

    A gentle introduction to the command line. Skip this part if you're already comfortable in a terminal.

    Open lesson →
  3. 2

    Pipelines with Nextflow Lecture

    What Nextflow and nf-core are, and why pipelines matter for reproducible, scalable science.

    Open lesson →
  4. 3

    Run an nf-core RNA-Seq pipeline Practical

    Hands-on — run a real nf-core/rnaseq analysis end to end, from raw reads to results.

    Open lesson →

Dive into the material

Grab the full course (data, scripts and Codespaces config) on GitHub, or try the official Nextflow training to go further.

Eco-Flow training repo Official Nextflow training